PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G35630.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 263aa    MW: 29213.6 Da    PI: 10.3534
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G35630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP70.22.3e-2266142371
       E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                   +++Lr +++    + +k+e+ g++t+neva+e+ +e           d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g
  OB01G35630.1  66 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksithnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 142
                   689*******...99999999**************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3562147IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.9E-2464142IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.2E-1867142IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.16E-1667143IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.35E-28147249IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.02E-31149252No hitNo description
SMARTSM011388.4E-27149256IPR014889Transcription factor DP, C-terminal
PfamPF087812.5E-23150249IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAPACGDAAA AAASVAPGLG SLLIRDAARL PPLPERGGGG NAAEREAGGA NRNGRKEKAG  60
AQRITGWGLR EFSKIVSKKV EAKGRTTYNE VADEIFAELK SITHNGLEFD EKNIRRRVYD  120
AFNVLIAIRV IAKDKKEIKW MGLTNYRYEK IQKLEEVHKE LITRIKNKKK LLQEIEKQFD  180
GLQNIKLRNQ ALQRSAESAN GICLPFLLIK TSRKARVEIE ISEDSKFARF DFNGAPFTMH  240
DDVSILEAIR SNSIGRIGLS ILP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2366143989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245290.0AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688292.10.0PREDICTED: transcription factor-like protein DPB isoform X1
TrEMBLJ3L2V70.0J3L2V7_ORYBR; Uncharacterized protein
STRINGOB01G35630.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-58Transcription factor DP