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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G35630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | E2F/DP | ||||||||
Protein Properties | Length: 263aa MW: 29213.6 Da PI: 10.3534 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 70.2 | 2.3e-22 | 66 | 142 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr +++ + +k+e+ g++t+neva+e+ +e d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g OB01G35630.1 66 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksithnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 142 689*******...99999999**************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-35 | 62 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.9E-24 | 64 | 142 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 6.2E-18 | 67 | 142 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.16E-16 | 67 | 143 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 3.35E-28 | 147 | 249 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.02E-31 | 149 | 252 | No hit | No description |
SMART | SM01138 | 8.4E-27 | 149 | 256 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 2.5E-23 | 150 | 249 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MAPACGDAAA AAASVAPGLG SLLIRDAARL PPLPERGGGG NAAEREAGGA NRNGRKEKAG 60 AQRITGWGLR EFSKIVSKKV EAKGRTTYNE VADEIFAELK SITHNGLEFD EKNIRRRVYD 120 AFNVLIAIRV IAKDKKEIKW MGLTNYRYEK IQKLEEVHKE LITRIKNKKK LLQEIEKQFD 180 GLQNIKLRNQ ALQRSAESAN GICLPFLLIK TSRKARVEIE ISEDSKFARF DFNGAPFTMH 240 DDVSILEAIR SNSIGRIGLS ILP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-23 | 66 | 143 | 9 | 89 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY224529 | 0.0 | AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688292.1 | 0.0 | PREDICTED: transcription factor-like protein DPB isoform X1 | ||||
TrEMBL | J3L2V7 | 0.0 | J3L2V7_ORYBR; Uncharacterized protein | ||||
STRING | OB01G35630.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 2e-58 | Transcription factor DP |